Department of Biology

 

 
  1. 2024
  2. Published

    Genetic diversity of lion populations in Kenya: Evaluating past management practices and recommendations for future conservation actions

    Chege, M., Sewalt, B., Lesilau, F., de Snoo, G., Patterson, B. D., Kariuki, L., Otiende, M., Omondi, P., de Iongh, H., Vrieling, K. & Bertola, Laura, 2024, In: Evolutionary Applications. 17, 3, 14 p., e13676.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Genomic and functional diversity of cultivated Bifidobacterium from human gut microbiota

    Li, W., Liang, H., He, W., Gao, X., Wu, Z., Hu, T., Lin, X., Wang, M., Zhong, Y., Zhang, H., Ge, L., Jin, X., Xiao, L. & Zou, Y., 2024, In: Heliyon. 10, 5, 14 p., e27270.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Giraffe lineages are shaped by major ancient admixture events

    Bertola, L. D., Quinn, L., Hanghøj, K., Garcia-Erill, G., Rasmussen, M. S., Balboa, R. F., Meisner, J., Bøggild, T., Wang, X., Lin, L., Nursyifa, C., Liu, X., Li, Z., Chege, M., Moodley, Y., Brüniche-Olsen, A., Kuja, J., Schubert, M., Agaba, M., Santander, C. G. & 7 others, Sinding, Mikkel Holger Strander, Muwanika, V., Masembe, C., Siegismund, Hans Redlef, Moltke, Ida, Albrechtsen, Anders & Heller, Rasmus, 2024, In: Current Biology. 34, 7, p. 1576-1586.e5 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Global N2O emissions from our planet: Which fluxes are affected by man, and can we reduce these?

    Christensen, Søren & Rousk, Kathrin, 2024, In: iScience. 27, 2, 10 p., 109042.

    Research output: Contribution to journalReviewResearchpeer-review

  6. Published

    Going through changes - the role of autophagy during reprogramming and differentiation

    Petersen, Morten, Ebstrup, E. & Rodriguez, Eleazar, 2024, In: Journal of Cell Science. 137, 4, 10 p., jcs261655.

    Research output: Contribution to journalReviewResearchpeer-review

  7. Published

    Gut microbiota signatures in inflammatory bowel disease

    Vestergaard, M. V., Allin, K. H., Eriksen, C., Zakerska-Banaszak, O., Arasaradnam, R. P., Alam, M. T., Kristiansen, Karsten, Brix, S. & Jess, T., 2024, In: United European Gastroenterology Journal. 12, 1, p. 22-33 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Herbivore dung deposition increases soil respiration through elevated substrate availability and microbial biomass

    Zhang, Z., Zhang, S. & Rinnan, Riikka, 2024, In: Applied Soil Ecology. 194, 10 p., 105203.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. E-pub ahead of print

    High N6-methyladenosine-activated TCEAL8 mRNA is a novel pancreatic cancer marker

    Hara, T., Meng, S., Sato, H., Tatekawa, S., Sasaki, K., Takeda, Y., Tsuji, Y., Arao, Y., Ofusa, K., Kitagawa, T., Yamada, D., Takahashi, H., Kobayashi, S., Motooka, D., Suzuki, Y., Rennie, S., Uchida, S., Mori, M., Ogawa, K., Doki, Y. & 2 others, Eguchi, H. & Ishii, H., 2024, (E-pub ahead of print) In: Cancer Science.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    High germline mutation rates, but not extreme population outbreaks, influence genetic diversity in a keystone coral predator

    Popovic, I., Bergeron, Lucie Adrienne, Bozec, Y. M., Waldvogel, A. M., Howitt, S. M., Damjanovic, K., Patel, F., Cabrera, M. G., Wörheide, G., Uthicke, S. & Riginos, C., 2024, In: PLOS Genetics. 20, 2, 22 p., e1011129.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    High-resolution vision in pelagic polychaetes

    Bok, M. J., Macali, A. & Garm, Anders Lydik, 2024, In: Current Biology. 34, 7, p. R269-R270 2 p.

    Research output: Contribution to journalComment/debateResearchpeer-review

  12. E-pub ahead of print

    Home-field advantage of litter decomposition differs among leaves, absorptive roots, and transport roots

    Zhao, X., Tian, Q., Michelsen, Anders, Lin, Q., Yuan, X., Chen, L., Lu, M., Jiang, Q., Zhao, R. & Liu, F., 2024, (E-pub ahead of print) In: Plant and Soil.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Horizontal transmission of a multidrug-resistant IncN plasmid isolated from urban wastewater

    Yu, Z., Wang, Q., Pinilla Redondo, Rafael, Madsen, Jonas Stenløkke, Clasen, K. A. D., Ananbeh, H., Olesen, Asmus Kalckar, Gong, Zhuang, Yang, Nan, Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Ecotoxicology and Environmental Safety. 271, 12 p., 115971.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon

    Brealey, Jaelle, Kodama, M., Rasmussen, Jacob Agerbo, Hansen, Søren Blikdal, Santos-Bay, Luisa, Lecaudey, L. A., Hansen, M., Fjære, E., Myrmel, L. S., Madsen, L., Bernhard, A., Sveier, H., Kristiansen, Karsten, Gilbert, M Thomas P, Martin, M. D. & Limborg, Morten Tønsberg, 2024, In: mSystems. 9, 2, 29 p., e01043-23.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Hourly methane and carbon dioxide fluxes from temperate ponds

    Sø, Jonas Stage, Martinsen, K. T., Kragh, T. & Sand-Jensen, Kaj, 2024, In: Biogeochemistry. 167, p. 177-195 19 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published
  17. Published

    Hymenopteran parasitoids reared from European gall midges (Diptera, Cecidomyiidae)

    Bruun, Hans Henrik, Haarder, S., Buhl, P. N. & Askew, R. R., 2024, In: Biodiversity Data Journal. 12, 34 p., e118487.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. E-pub ahead of print

    Hypoxia in tomato (Solanum lycopersicum) fruit during ripening: Biophysical elucidation by a 3D reaction–diffusion model

    Xiao, H., Verboven, P., Tong, Shuai, Pedersen, Ole & Nicolaï, B., 2024, (E-pub ahead of print) In: Plant Physiology.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Identification of constrained sequence elements across 239 primate genomes

    Kuderna, L. F. K., Ulirsch, J. C., Rashid, S., Ameen, M., Sundaram, L., Hickey, G., Cox, A. J., Gao, H., Kumar, A., Aguet, F., Christmas, M. J., Clawson, H., Haeussler, M., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A., Bergman, J. & 72 others, Rouselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A., Chuma, I. S., Horvath, J. E., Hvilsom, C., Juan, D., Frandsen, P., Schraiber, J. G., de Melo, F. R., Bertuol, F., Byrne, H., Sampaio, I., Farias, I., Valsecchi, J., Messias, M., da Silva, M. N. F., Trivedi, M., Rossi, R., Hrbek, T., Andriaholinirina, N., Rabarivola, C. J., Zaramody, A., Jolly, C. J., Phillips-Conroy, J., Wilkerson, G., Abee, C., Simmons, J. H., Fernandez-Duque, E., Kanthaswamy, S., Shiferaw, F., Wu, D., Zhou, L., Shao, Y., KU, thw266, Keyyu, J. D., Knauf, S., Le, M. D., Lizano, E., Merker, S., Navarro, A., Nadler, T., Khor, C. C., Lee, J., Tan, P., Lim, W. K., Kitchener, A. C., Zinner, D., Gut, I., Melin, A. D., Guschanski, K., Schierup, M. H., Beck, R. M. D., Karakikes, I., Wang, K. C., Umapathy, G., Roos, C., Boubli, J. P., Siepel, A., Kundaje, A., Paten, B., Lindblad-Toh, K., Rogers, J., Marques Bonet, T. & Farh, K. K. H., 2024, In: Nature. 625, p. 735–742 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Identification of high-performing antibodies for the reliable detection of Tau proteoforms by Western blotting and immunohistochemistry

    Ellis, M. J., Lekka, C., Holden, K. L., Tulmin, H., Seedat, F., O’Brien, D. P., Dhayal, S., Zeissler, M. L., Knudsen, Jakob Grunnet, Kessler, B. M., Morgan, N. G., Todd, J. A., Richardson, S. J. & Stefana, M. I., 2024, In: Acta Neuropathologica. 147, 1, 38 p., 87.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Imaging of extracellular and intracellular ATP in pancreatic beta cells reveals correlation between glucose metabolism and purinergic signalling

    Ghiasi, S. M., Christensen, Nynne, Pedersen, Per Amstrup, Skovhøj, Emil Zeng & Novak, Ivana, 2024, In: Cellular Signalling. 117, 12 p., 111109.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Impact of salinity and temperature on the vital rates of co-occurring Calanus glacialis and C. finmarchicus from West Greenland

    Makri, M., Hansen, Per Juel & Gissel Nielsen, T., 2024, In: Marine Ecology - Progress Series. 729, p. 47-62 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. E-pub ahead of print

    Impact of the early COVID-19 pandemic on adult mental health-related dispensed medications, hospitalizations and specialist outpatient visits in Norway and Sweden: Interrupted time series analysis

    Moreno-Martos, D., Zhao, J., Li, H., Nyberg, F., Bjørndal, L. D., Hajiebrahimi, M., Wettermark, B., Aakjær, Mia, Andersen, Morten, Sessa, Maurizio, Lupattelli, A., Nordeng, H. & Morales, D. R., 2024, (E-pub ahead of print) In: British Journal of Clinical Pharmacology.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. E-pub ahead of print

    Importance of integrating mixoplankton into marine ecosystem policy and management—Examples from the Marine Strategy Framework Directive

    Anschütz, A., Maselli, Maira, Traboni, C., Boon, A. R. & Stolte, W., 2024, (E-pub ahead of print) In: Integrated Environmental Assessment and Management.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Inhibitors of bacterial immune systems: discovery, mechanisms and applications

    Mayo-Muñoz, D., Pinilla Redondo, Rafael, Camara, Sarah, Birkholz, N. & Fineran, P. C., 2024, In: Nature Reviews Genetics. 25, 4, p. 237-254 18 p.

    Research output: Contribution to journalReviewResearchpeer-review

  26. Published

    Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems

    Yu, Z., He, Wanli, Klincke, F., Madsen, Jonas Stenløkke, Kot, Witold, Hansen, Lars Hestbjerg, Quintela-Baluja, M., Balboa, S., Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Environment International. 183, 12 p., 108351.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Intake of different types of seafood and meat and risk of type 2 diabetes in women: a prospective study supported by a dietary intervention in mice

    Myrmel, L. S., Øyen, J., Brantsæter, A. L., Fjære, E., Haugvaldstad, K., Birkeland, K. I., Nygård, O., Kristiansen, Karsten, Egeland, G. M. & Madsen, L., 2024, In: Scientific Reports. 14, 1, 14 p., 8950.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Integrating coarse-grained molecular dynamics simulations with small-angle X-ray scattering data to characterize multidomain proteins and their assemblies

    Thomasen, Emil, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 205 p.

    Research output: Book/ReportPh.D. thesisResearch

  29. E-pub ahead of print

    International consensus guidelines for the definition, detection, and interpretation of autophagy-dependent ferroptosis

    Chen, X., Tsvetkov, A. S., Shen, H., Isidoro, C., Ktistakis, N. T., Linkermann, A., Koopman, W. J. H., Simon, H., Galluzzi, L., Luo, S., Xu, D., Gu, W., Peulen, O., Cai, Q., Rubinsztein, D. C., Chi, J., Zhang, D. D., Li, C., Toyokuni, S., Liu, J. & 49 others, Roh, J., Dai, E., Juhasz, G., Liu, W., Zhang, J., Yang, M., Liu, J., Zhu, L., Zou, W., Piacentini, M., Ding, W., Yue, Z., Xie, Y., Petersen, Morten, Gewirtz, D. A., Mandell, M. A., Chu, C. T., Sinha, D., Eftekharpour, E., Zhivotovsky, B., Besteiro, S., Gabrilovich, D. I., Kim, D., Kagan, V. E., Bayir, H., Chen, G., Ayton, S., Lünemann, J. D., Komatsu, M., Krautwald, S., Loos, B., Baehrecke, E. H., Wang, J., Lane, J. D., Sadoshima, J., Yang, W. S., Gao, M., Münz, C., Thumm, M., Kampmann, M., Yu, D., Lipinski, M. M., Jones, J. W., Jiang, X., Zeh, H. J., Kang, R., Klionsky, D. J., Kroemer, G. & Tang, D., 2024, (E-pub ahead of print) In: Autophagy. p. 1-34

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Interphylum dissemination of NDM-5-positive plasmids in hospital wastewater from Fuzhou, China: a single-centre, culture-independent, plasmid transmission study

    Yang, Q. E., Ma, X., Zeng, L., Wang, Q., Li, M., Teng, L., He, M., Liu, C., Zhao, M., Wang, M., Hui, D., Madsen, Jonas Stenløkke, Liao, H., Walsh, T. R. & Zhou, S., 2024, In: The Lancet Microbe. 5, 1, p. e13-e23 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Interspecies interactions in dairy biofilms drive community structure and response against cleaning and disinfection

    Sadiq, F. A., De Reu, K., Yang, Nan, Burmølle, Mette & Heyndrickx, M., 2024, In: Biofilm. 7, 13 p., 100195.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth

    Yang, Nan, Røder, Henriette Lyng, Wicaksono, W. A., Wassermann, B., Russel, J., Li, Xuan Ji, Nesme, Joseph, Berg, G., Sørensen, Søren Johannes & Burmølle, Mette, 2024, In: The ISME Journal. 18, 1, 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Intra-colony spatial variance of oxyregulation and hypoxic thresholds for key Acropora coral species

    Dilernia, N. J., Woodcock, S., Camp, E. F., Hughes, D. J., Kühl, Michael & Suggett, D. J., 2024, In: Ecology and Evolution. 14, 3, 16 p., e11100.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Introgression and disruption of migration routes have shaped the genetic integrity of wildebeest populations

    Liu, X., Lin, L., Sinding, M. H. S., Bertola, L. D., Hanghøj, K., Quinn, L., Garcia-Erill, G., Rasmussen, M. S., Schubert, M., Pečnerová, P., Balboa, R. F., Li, Z., Heaton, M. P., Smith, T. P. L., Pinto, R. R., Wang, X., Kuja, J., Brüniche-Olsen, A., Meisner, J., Santander, C. G. & 8 others, Ogutu, J. O., Masembe, C., Rodrigues da Fonseca, Rute Andreia, Muwanika, V., Siegismund, Hans Redlef, Albrechtsen, Anders, Moltke, Ida & Heller, Rasmus, 2024, In: Nature Communications. 15, 1, 16 p., 2921.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Investigating the role of TGF-β and BDNF in cancer-related depression: a primary cross-sectional study

    Lin, J., Xiao, L., Nie, Xinchen, Wang, Z., Luo, Y., Zhang, L. & Liu, Yawei, 2024, In: Supportive Care in Cancer. 32, 6, 9 p., 365.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Investigations on Microbes Attached to the Cuticle of Phytonematodes

    Topalovic, Olivera, Radaković, Z. S., Elhady, A., Bredenbruch, S. & Heuer, H., 2024, Plant-Nematode Interactions. Molinari, S. (ed.). Vol. 2756. p. 257-270 14 p. (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  37. Published

    Isochrony in barks of Cape fur seal (Arctocephalus pusillus pusillus) pups and adults

    Osiecka, A. N., Fearey, J., Ravignani, A. & Burchardt, L. S., 2024, In: Ecology and Evolution. 14, 3, 11 p., e11085.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Isolation of potentially novel species expands the genomic and functional diversity of Lachnospiraceae

    Lin, X., Hu, T., Wu, Z., Li, L., Wang, Y., Wen, D., Liu, X., Li, W., Liang, H., Jin, X., Xu, X., Wang, J., Yang, H., Kristiansen, Karsten, Xiao, L. & Zou, Y., 2024, In: iMeta. 3, 2, 18 p., e174.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles

    Rauluseviciute, I., Riudavets-puig, R., Blanc-mathieu, R., Castro-mondragon, J., Ferenc, K., Kumar, V., Lemma, R. B., Lucas, J., Chèneby, J., Baranasic, D., Khan, A., Fornes, O., Gundersen, S., Johansen, M., Hovig, E., Lenhard, B., Sandelin, Albin Gustav, Wasserman, W., Parcy, F. & Mathelier, A., 2024, In: Nucleic Acids Symposium Series. 52, D1, p. D174–D182 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. E-pub ahead of print

    Lake food web structure in Teici Nature reserve, Latvia: fish presence shapes functioning of pristine bog lake food webs

    Zagars, M., Christoffersen, Kirsten Seestern & Cremona, F., 2024, (E-pub ahead of print) In: Hydrobiologia.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    Land-use effects on leaf-litter breakdown in streams in a tropical lowland catchment

    Rojas-Castillo, O. A., Kepfer Rojas, Sebastian & Jacobsen, Dean, 2024, In: Aquatic Sciences. 86, 15 p., 67.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Lipid shape and packing are key for optimal design of pH-sensitive mRNA lipid nanoparticles

    Tesei, Giulio, Hsiao, Y. W., Dabkowska, A., Grönberg, G., Yanez Arteta, M., Ulkoski, D., Bray, D. J., Trulsson, M., Ulander, J., Lund, M. & Lindfors, L., 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 2, 11 p., e2311700120.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Long-read genome sequencing provides novel insights into the harmful algal bloom species Prymnesium parvum

    Jian, J., Wu, Z., Silva-núñez, A., Li, X., Zheng, X., Luo, B., Liu, Y., Fang, X., Workman, C. T., Larsen, T. O., Hansen, Per Juel & Sonnenschein, E. C., 2024, In: Science of the Total Environment. 908, 168042.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published
  45. Published

    Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant–microorganism feedback in the rhizosphere

    Behr, J. H., Kuhl-Nagel, T., Sommermann, L., Moradtalab, N., Chowdhury, S. P., Schloter, M., Windisch, S., Schellenberg, I., Maccario, Lorrie, Sørensen, Søren Johannes, Rothballer, M., Geistlinger, J., Smalla, K., Ludewig, U., Neumann, G., Grosch, R. & Babin, D., 2024, In: FEMS Microbiology Ecology. 100, 2, 18 p., fiae003.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Long-term phytoplankton dynamics in two High Arctic lakes (north-east Greenland)

    Moedt, Sanne Mariël, Olrik, K., Schmidt, N. M., Jeppesen, E. & Christoffersen, Kirsten Seestern, 2024, In: Freshwater Biology. 69, 3, p. 403-415 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    MCT4 and CD147 colocalize with MMP14 in invadopodia and support matrix degradation and invasion by breast cancer cells

    Meng, Signe, Sørensen, E. E., Ponniah, M., Thorlacius-Ussing, J., Crouigneau, R., Larsen, T., Borre, M. T., Willumsen, N., Flinck, M. & Pedersen, Stine Helene Falsig, 2024, In: Journal of Cell Science. 137, 8, 15 p., jcs261608.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    MYC activity at enhancers drives prognostic transcriptional programs through an epigenetic switch

    Jakobsen, S. T., Jensen, R. A. M., Madsen, M. S., Ravnsborg, T., Vaagenso, C. S., Siersbæk, M. S., Einarsson, H., Andersson, Robin, Jensen, O. N. & Siersbæk, R., 2024, In: Nature Genetics. 56, p. 663–674 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    MacroLoops for microRNAs: shall we revise the maximum allowed size?

    Arribas Hernandez, Laura, 2024, In: The Plant Cell. 36, 5, p. 1572-1573 2 p.

    Research output: Contribution to journalLetterResearchpeer-review

  50. Published

    Mechanisms of Systemic Osmoregulation in Insects

    Halberg, Kenneth Veland & Denholm, B., 2024, In: Annual Review of Entomology. 69, p. 415-438 24 p.

    Research output: Contribution to journalReviewResearchpeer-review

  51. Published

    Meta‐analysis Contrasting Freshwater Biodiversity in Forests and Oil Palm Plantations with and without Riparian Buffers

    Rojas‐Castillo, O. A., Kepfer Rojas, Sebastian, Juen, L., Fogaça De Assis Montag, L., Carvalho, F. G., Mendes, T. P., Chua, K. W. J., Wilkinson, C. L., Amal, M. N. A., Fahmi‐Ahmad, M. & Jacobsen, Dean, 2024, In: Conservation Biology. 38, 1, p. 1-14 14 p., e14172.

    Research output: Contribution to journalReviewResearchpeer-review

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