Department of Biology

 

 
  1. 2023
  2. Published

    Liquid-Liquid Phase Separation Primes Spider Silk Proteins for Fiber Formation via a Conditional Sticker Domain

    Leppert, A., Chen, G., Lama, D., Sahin, Cagla, Railaite, V., Shilkova, O., Arndt, T., Marklund, E. G., Lane, D. P., Rising, A. & Landreh, M., 2023, In: Nano Letters. 23, 12, 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Litter chemistry of common European tree species drives the feeding preference and consumption rate of soil invertebrates, and shapes the diversity and structure of gut and faecal microbiomes

    Heděnec, P., Zheng, H., Siqueira, D. P., Peng, Y., Schmidt, Inger Kappel, Frøslev, Tobias Guldberg, Kjøller, Rasmus, Li, H., Frouz, J. & Vesterdal, Lars, 2023, In: Soil Biology and Biochemistry. 177, 13 p., 108918.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Living on the edge – first survey of loriciferans along the Atacama Trench

    Sørensen, Martin Vinther, Herranz, Maria, Grzelak, K., Shimabukuro, M., Kristensen, Reinhardt Møbjerg & Zeppilli, D., 2023, In: European Journal of Taxonomy. 879, p. 162-187

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Local adaptation through countergradient selection in northern populations of Skeletonema marinoi

    Sefbom, J., Kremp, A., Hansen, Per Juel, Johannesson, K., Godhe, A. & Rengefors, K., 2023, In: Evolutionary Applications. 16, 2, 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Long divergent haplotypes introgressed from wild sheep are associated with distinct morphological and adaptive characteristics in domestic sheep

    Cheng, H., Zhang, Z., Wen, J., Lenstra, J. A., Heller, Rasmus, Cai, Y., Guo, Y., Li, M., Li, R., Li, W., He, S., Wang, J., Shao, J., Song, Y., Zhang, L., Billah, M., Wang, X., Liu, M. & Jiang, Y., 2023, In: PLOS Genetics. 19, 2, 27 p., e1010615.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Long-read MinION™ sequencing of 16S and 16S-ITS-23S rRNA genes provides species-level resolution of Lactobacillaceae in mixed communities

    Olivier, S. A., Bull, M. K., Strube, M. L., Murphy, Rob, Ross, T., Bowman, J. P. & Chapman, B., 2023, In: Frontiers in Microbiology. 14, 15 p., 1290756.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Long-term changes of nitrogen leaching and the contributions of terrestrial nutrient sources to lake eutrophication dynamics on the Yangtze Plain of China

    Guan, Qi, Tang, Jing, Feng, L., Olin, S. & Schurgers, Guy, 2023, In: Biogeosciences. 20, 8, p. 1635–1648

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Long-term immersion of compostable plastics in marine aquarium: Microbial biofilm evolution and polymer degradation

    Delacuvellerie, A., Brusselman, A., Cyriaque, V., Benali, S., Moins, S., Raquez, J. M., Gobert, S. & Wattiez, R., 2023, In: Marine Pollution Bulletin. 189, 10 p., 114711.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Lymph Vessels Associate with Cancer Stem Cells from Initiation to Malignant Stages of Squamous Cell Carcinoma

    Cazzola, Anna, Calzón Lozano, D., Menne, D. H., Dávila Pedrera, R., Liu, J., Peña-Jiménez, D., Fontenete, S., Halin, C. & Perez-Moreno, Mirna, 2023, In: International Journal of Molecular Sciences. 24, 17, 20 p., 13615.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Lynch syndrome, molecular mechanisms and variant classification

    Abildgaard, A. B., Nielsen, S., Bernstein, I., Stein, Amelie, Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2023, In: British Journal of Cancer. 128, 9 p.

    Research output: Contribution to journalReviewResearchpeer-review

  12. Published

    Lysine deserts prevent adventitious ubiquitylation of ubiquitin-proteasome components

    Kampmeyer, Caroline, Grønbæk-Thygesen, Martin, Oelerich, N., Tatham, M. H., Cagiada, Matteo, Lindorff-Larsen, K., Boomsma, Wouter, Hofmann, K. & Hartmann-Petersen, Rasmus, 2023, In: Cellular and Molecular Life Sciences. 80, 6, 18 p., 143.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Macroecological and biogeographical patterns of limb reduction in the world's skinks

    Camaiti, M., Evans, A. R., Hipsley, Christy Anna, Hutchinson, M. N., Meiri, S., de Oliveira Anderson, R., Slavenko, A. & Chapple, D. G., 2023, In: Journal of Biogeography. 50, 2, 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Make the environment protect you from disease: elevated CO2 inhibits antagonists of the fungus-farming termite symbiosis

    Schmidt, Suzanne, Bos, N., Murphy, R., Koné, N. A., Silué, K. S., Meyling, Nicolai Vitt & Poulsen, Michael, 2023, In: Frontiers in Ecology and Evolution. 11, 9 p., 1134492.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published
  16. Published

    Mass Spectrometry of RNA-Binding Proteins during Liquid-Liquid Phase Separation Reveals Distinct Assembly Mechanisms and Droplet Architectures

    Sahin, Cagla, Motso, A., Gu, X., Feyrer, H., Lama, D., Arndt, T., Rising, A., Gese, G. V., Haellberg, B. M., Marklund, E. G., Schafer, N. P., Petzold, K., Teilum, Kaare, Wolynes, P. G. & Landreh, M., 2023, In: Journal of the American Chemical Society. 145, 19, 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Mendelian randomization analyses reveal causal relationships between the human microbiome and longevity

    Liu, X., Zou, L., Nie, C., Qin, Y., Tong, X., Wang, J., Yang, H., Xu, X., Jin, X., Xiao, L., Zhang, T., Min, J., Zeng, Y., Jia, H. & Hou, Y., 2023, In: Scientific Reports. 13, 1, 13 p., 5127.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Metabolic effects of diet containing blue mussel (Mytilus edulis) and blue mussel-fed salmon in a mouse model of obesity

    Azad, A. M., Bernhard, A., Shen, A., Myrmel, L. S., Lundebye, A., Lecaudey, L. A., Fjære, E., Tri Ho, Q., Sveier, H., Kristiansen, Karsten, Limborg, Morten Tønsberg & Madsen, L., 2023, In: Food Research International. 169, 11 p., 112927.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Metabolic regulation of glucagon secretion

    Armour, Sarah Louise, Stanley, J. E., Cantley, J., Dean, E. D. & Knudsen, Jakob Grunnet, 2023, In: The Journal of endocrinology. 259, 1, 15 p., e230081.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Metaboloepigenetics in cancer, immunity and cardiovascular disease

    Keating, S. T. & El-Osta, A., 2023, In: Cardiovascular Research. 119, 2, 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Metagenome-Genome wide association studies for analysis of complex diseases

    Zhang, T., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 39 p.

    Research output: Book/ReportPh.D. thesisResearch

  22. Published

    Methane and carbon dioxide fluxes at high spatiotemporal resolution from a small temperate lake

    Sø, Jonas Stage, Sand-Jensen, Kaj, Martinsen, K. T., Polauke, E., Kjær, Johan Emil, Reitzel, K. & Kragh, T., 2023, In: Science of the Total Environment. 878, 11 p., 162895.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Methods for the purification and detection of single nucleotide KRAS mutations on extrachromosomal circular DNA in human plasma

    Hansen, Lasse Bøllehuus, Jakobsen, S. F., Zole, Egija, Noer, Julie Boertmann, Fang, L. T., Alizadeh, S., Johansen, Julia Sidenius, Mohiyuddin, M. & Regenberg, Birgitte, 2023, In: Cancer Medicine. 12, 17, p. 17679-17691 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Microbe-mineral interactions in the Plastisphere: Coastal biogeochemistry and consequences for degradation of plastics

    Dodhia, Maya, Rogers, K. L., Fernandez Juarez, Victor, Carreres-Calabuig, J. A., Löscher, C. R., Tisserand, A. A., Keulen, N., Riemann, Lasse, Shashoua, Y. & Posth, Nicole Rita Elisabeth, 2023, In: Frontiers in Marine Science. 10, 17 p., 1134815.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Microbe-plant Interactions: Impact of bacterial interactions and multispecies biofilms on plant growth and drought tolerance

    Yang, Nan, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 115 p.

    Research output: Book/ReportPh.D. thesisResearch

  26. Published

    Microbial Dynamics in Newly Diagnosed and Treatment Naive IBD Patients in the Mediterranean

    Rausch, P., Ellul, S., Pisani, A., Bang, C., Tabone, T., Cordina, C. M., Zahra, G., Franke, A. & Ellul, P., 2023, In: Inflammatory Bowel Diseases. 29, 7, 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Microplastic pollution associated with reduced respiration in seagrass (Zostera marina L.) and associated epiphytes

    Molin, J. M., Groth-Andersen, W. E., Hansen, Per Juel, Kühl, Michael & Brodersen, Kasper Elgetti, 2023, In: Frontiers in Marine Science. 10, 14 p., 1216299.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Microscale imaging sheds light on species-specific strategies for photo-regulation and photo-acclimation of microphytobenthic diatoms

    Jesus, B., Jauffrais, T., Trampe, Erik, Méléder, V., Ribeiro, L., Bernhard, J. M., Geslin, E. & Kühl, Michael, 2023, In: Environmental Microbiology. 25, 12, p. 3087-3103 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Mind the gap

    Larsen-Ledet, Sven & Stein, Amelie, 2023, In: Structure. 31, 6, p. 641-643 3 p.

    Research output: Contribution to journalComment/debateResearchpeer-review

  30. Published

    Mitigation of Greenhouse Gas Emissions from Rice via Manipulation of Key Root Traits

    Jimenez Serna, Juan de la Cruz & Pedersen, Ole, 2023, In: Rice. 16, 1, 10 p., 24.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Mixotrophic lifestyle of the ichthyotoxic haptophyte, Prymnesium parvum, offered different sources of phosphorus: [Inkl. Corrigendum]

    Boucher, C., Lacour, T., Julie, A., Damien, R., Hansen, Per Juel & Francis, M., 2023, In: Harmful Algae. 127, p. 1-10 10 p., 102483.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Model of Oxygen Conditions within Aquaculture Sea Cages

    Bergsson, H., Svendsen, M. B. S. & Steffensen, John Fleng, 2023, In: Biology. 12, 11, 17 p., 1408.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Modeling the radiative, thermal and chemical microenvironment of 3D scanned corals

    Murthy, Swathi, Picioreanu, C. & Kühl, Michael, 2023, In: Frontiers in Marine Science. 10, 17 p., 1160208.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Moderate nitrogen retention in temperate heath ecosystem after elevated CO2, drought and warming through 7 years

    Andresen, L. C., Ambus, Per Lennart, Beier, Claus & Michelsen, Anders, 2023, In: European Journal of Soil Science. 74, 4, 13 p., e13397.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Molecular Characterization and Morpho-Taxonomy of Gambierdiscus caribaeus Vandersea, Litaker, M.A.Faust, Kibler, W.C.Holland & P.A.Tester (Dinophyceae) from Mauritius Island, South-West Indian Ocean

    Mussai, P., Larsen, Jacob & Jeewon, R., 2023, In: Cryptogamie, Algologie. 44, 1, p. 1-11 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Molecular Epidemiology of HCV RNA Genotype-3 in Dhaka City, Bangladesh

    Rahman, M. A., Islam, M. M., Ali, M. E., Islam, M. A., Afroze, F., Hossain, Mohammad Shamim & Rus'd, A. A., 2023, In: Global Medical Genetics. 10, 3, p. 199-204 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Molecular Regulation of SpoT

    Schicketanz, Muriel Leandra, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 190 p.

    Research output: Book/ReportPh.D. thesisResearch

  38. Published

    Molecular Representations in Machine-Learning-Based Prediction of PK Parameters for Insulin Analogs

    Einarson, K. A., Bendtsen, K. M., Li, K., Thomsen, M., Kristensen, N. R., Winther, Ole, Fulle, S., Clemmensen, L. & Refsgaard, H. H. F., 2023, In: ACS Omega. 8, 26, p. 23566-23578 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Molecular basis for inhibition of type III-B CRISPR-Cas by an archaeal viral anti-CRISPR protein

    Lin, Jinzhong, Alfastsen, L., Bhoobalan, Yuvaraj & Peng, Xu, 2023, In: Cell Host and Microbe. 31, 11, p. 1837-1849.e5 19 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Molecular exploration of fossil eggshell uncovers hidden lineage of giant extinct bird

    Grealy, A., Miller, G. H., Phillips, M. J., Clarke, S. J., Fogel, M., Patalwala, D., Rigby, P., Hubbard, A., Demarchi, B., Collins, Matthew James, Mackie, Meaghan, Sakalauskaite, J., Stiller, Josefin, Clarke, J. A., Legendre, L. J., Douglass, K., Hansford, J., Haile, J. & Bunce, M., 2023, In: Nature Communications. 14, 14 p., 914.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    Molecular insights into alginate beta-lactoglobulin A multivalencies: The foundation for their amorphous aggregates and coacervation

    Madsen, M., Prestel, Andreas, Madland, E., Westh, P., Tondervik, A., Sletta, H., Peters, G. H. J., Aachmann, F. L. L., Kragelund, Birthe Brandt & Svensson, B., 2023, In: Protein Science. 32, 2, 15 p., 4556.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Monomeric α-synuclein activates the plasma membrane calcium pump

    Kowalski, A., Betzer, C., Larsen, S. T., Gregersen, E., Newcombe, Estella Anne, Bermejo, M. C., Bendtsen, V. W., Diemer, J., Ernstsen, C. V., Jain, S., Bou, A. E., Langkilde, Annette Eva, Nejsum, L. N., Klipp, E., Edwards, R., Kragelund, Birthe Brandt, Jensen, P. H. & Nissen, Poul, 2023, In: EMBO Journal. 42, 23, 21 p., e111122.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    More warm-adapted species in soil seed banks than in herb layer plant communities across Europe

    Auffret, A. G., Vangansbeke, P., De Frenne, P., Auestad, I., Basto, S., Grandin, U., Jacquemyn, H., Jakobsson, A., Kalamees, R., Koch, M. A., Marrs, R., Marteinsdóttir, B., Wagner, M., Bekker, R. M., Bruun, H. H., Decocq, G., Hermy, M., Jankowska-Błaszczuk, M., Milberg, P., Måren, I. E. & 6 others, Pakeman, R. J., Phoenix, G. K., Thompson, K., Van Calster, H., Vandvik, V. & Plue, J., 2023, In: Journal of Ecology. 111, 5, 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Multi-level combinatoriality in magpie non-song vocalizations

    Walsh, S. L., Engesser, Sabrina, Townsend, S. W. & Ridley, A. R., 2023, In: Journal of the Royal Society Interface. 20, 199, 11 p., 20220679.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Multiple paths toward repeated phenotypic evolution in the spiny-leg adaptive radiation (Tetragnatha; Hawai'i)

    Cerca, J., Cotoras, D. D., Santander, Cindy, Bieker, V. C., Hutchins, L., Morin-Lagos, J., Prada, C. F., Kennedy, S., Krehenwinkel, H., Rominger, A. J., Meier, J., Dimitrov, D., Struck, T. H. & Gillespie, R. G., 2023, In: Molecular Ecology. 32, 18, p. 4971-4985 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Muscle PGC-1α modulates hepatic mitophagy regulation during aging

    Christensen, N. M., Jørgensen, Stine Ringholm, Buch, B. T., Gudiksen, Anders, Halling, Jens Frey & Pilegaard, Henriette, 2023, In: Experimental Gerontology. 172, 9 p., 112046.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    NHA1 is a cation/proton antiporter essential for the water-conserving functions of the rectal complex in Tribolium castaneum.

    Naseem, Muhammad Tayyib, Beaven, R., Koyama, Takashi, Naz, S., Su, S., Leader, D. P., Klærke, Dan Arne, Callø, Kirstine, Denholm, B. & Halberg, Kenneth Veland, 2023, In: Proceedings of the National Academy of Sciences of the United States of America. 120, 13, 11 p., e2217084120.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    National records of 3000 European bee and hoverfly species: A contribution to pollinator conservation

    Reverté, S., Miličić, M., Ačanski, J., Andrić, A., Aracil, A., Aubert, M., Balzan, M. V., Bartomeus, I., Bogusch, P., Bosch, J., Budrys, E., Cantú-Salazar, L., Castro, S., Cornalba, M., Demeter, I., Devalez, J., Dorchin, A., Dufrêne, E., Đorđević, A., Fisler, L. & 87 others, Fitzpatrick, Ú., Flaminio, S., Földesi, R., Gaspar, H., Genoud, D., Geslin, B., Ghisbain, G., Gilbert, F., Gogala, A., Grković, A., Heimburg, H., Herrera-Mesías, F., Jacobs, M., Janković Milosavljević, M., Janssen, K., Jensen, J. K., Ješovnik, A., Józan, Z., Karlis, G., Kasparek, M., Kovács-Hostyánszki, A., Kuhlmann, M., Le Divelec, R., Leclercq, N., Likov, L., Litman, J., Ljubomirov, T., Madsen, Henning Bang, Marshall, L., Mazánek, L., Milić, D., Mignot, M., Mudri-Stojnić, S., Müller, A., Nedeljković, Z., Nikolić, P., Ødegaard, F., Patiny, S., Paukkunen, J., Pennards, G., Pérez-Bañón, C., Perrard, A., Petanidou, T., Pettersson, L. B., Popov, G., Popov, S., Praz, C., Prokhorov, A., Quaranta, M., Radchenko, V. G., Radenković, S., Rasmont, P., Rasmussen, C., Reemer, M., Ricarte, A., Risch, S., Roberts, S. P. M., Rojo, S., Ropars, L., Rosa, P., Ruiz, C., Sentil, A., Shparyk, V., Smit, J., Sommaggio, D., Soon, V., Ssymank, A., Ståhls, G., Stavrinides, M., Straka, J., Tarlap, P., Terzo, M., Tomozii, B., Tot, T., van der Ent, L. J., van Steenis, J., van Steenis, W., Varnava, A. I., Vereecken, N. J., Veselić, S., Vesnić, A., Weigand, A., Wisniowski, B., Wood, T. J., Zimmermann, D., Michez, D. & Vujić, A., 2023, In: Insect Conservation and Diversity. 16, 6, p. 758-775 18 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Nematodes as suppressors and facilitators of plant performance

    Topalovic, Olivera & Geisen, S., 2023, In: New Phytologist. 238, 6, p. 2305-2312

    Research output: Contribution to journalReviewResearchpeer-review

  50. Published

    New Echinoderes (Kinorhyncha Cyclorhagida) from Mexico: Molecular barcoding demonstrate species delimitation between highly similar morphospecies

    Escalante, Abril Anguas, Herranz, Maria, Martínez-Arce, A., De Jesús-Navarrete, A. & Sørensen, Martin Vinther, 2023, In: Zoologischer Anzeiger. 302, p. 146-165 20 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    New insights into osmobiosis and chemobiosis in tardigrades

    Hvidepil, L. K. B. & Møbjerg, Nadja, 2023, In: Frontiers in Physiology. 14, 9 p., 1274522.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published

    Next Generation Sequencing Library Preparation Technologies and Applications

    Wu, Zongze, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 143 p.

    Research output: Book/ReportPh.D. thesisResearch

  53. Published

    Next generation sequencing facilitates the mining of genomic information in a clinical pathogen (Clostridium difficile) and the viromes of wildlife bats and rodents

    Zhao, Hailong, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 127 p.

    Research output: Book/ReportPh.D. thesisResearch

  54. Published

    Nitrogen fixation associated with two cohabiting moss species expresses different patterns under Cu and Zn contamination

    Sjøgren, T. D., Wang, Y. & Rousk, Kathrin, 2023, In: Environmental Science and Pollution Research. 30, p. 85701-85707 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  55. Published

    Nitrogen transformation processes in soil along a High Arctic tundra transect

    Guo, M., Wang, Q., Zhang, W., Jiao, Yi, Sun, B., Hou, L. & Zhu, R., 2023, In: Advances in Polar Science. 34, 2, p. 105-124 20 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  56. Published

    Non-invasive investigation of the morphology and optical properties of the upside-down jellyfish Cassiopea with optical coherence tomography

    Lyndby, N. H., Murthy, Swathi, Bessette, S., Jakobsen, S. L., Meibom, A. & Kühl, Michael, 2023, In: Proceedings of the Royal Society B: Biological Sciences. 290, 2007, 11 p., 20230127.

    Research output: Contribution to journalJournal articleResearchpeer-review

  57. Published

    Novel tRNA Gene Rearrangements in the Mitochondrial Genomes of Poneroid Ants and Phylogenetic Implication of Paraponerinae (Hymenoptera: Formicidae)

    Xiong, Z., He, Ding, Guang, X. & Li, Q., 2023, In: Life. 13, 10, 17 p., 2068.

    Research output: Contribution to journalJournal articleResearchpeer-review

  58. Published

    On the origin and evolution of RNA editing in metazoans

    Zhang, P., Zhu, Y., Guo, Q., Li, J., Zhan, X., Yu, H., Xie, N., Tan, H., Lundholm, Nina, Garcia-Cuetos, L., Martin, M. D., Subirats, M. A., Su, Y., Ruiz-Trillo, I., Martindale, M. Q., Yu, J., Gilbert, M Thomas P, KU, thw266 & Li, Q., 2023, In: Cell Reports. 42, 2, 22 p., 112112.

    Research output: Contribution to journalJournal articleResearchpeer-review

  59. Published

    On the origin of regulatory elements: Computational analyses of transposable elements in pluripotency and development

    Bakoulis, Stylianos, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 135 p.

    Research output: Book/ReportPh.D. thesisResearch

  60. Published

    Oral administration of helminth fluid modulates distinct tuft cell and immune-metabolic cues linked to reduced body fat

    Andersen, D., Moll, J. M., Arora, P., Danneskiold-Samsøe, Niels Banhos, Sonne, Si Brask, Workman, C. T., Williams, Andrew Richard, Kristiansen, Karsten & Brix, S., 2023, In: Parasite Immunology. 45, 7, 12 p., e12998.

    Research output: Contribution to journalJournal articleResearchpeer-review

  61. Published

    Oropharyngeal Microbiota Clusters in Children with Asthma or Wheeze Associate with Allergy, Blood Transcriptomic Immune Pathways, and Exacerbation Risk

    U-BIOPRED Study Group, U. S. G., 2023, In: American Journal of Respiratory and Critical Care Medicine. 208, 2, p. 142-154 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  62. Published

    Out with a flash: Inactivation mechanism, structure and kinetics of copepod luciferases with gaussia luciferase as a representative example

    Dijkema, F. M., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 255 p.

    Research output: Book/ReportPh.D. thesisResearch

  63. Published

    Outer apoplastic barriers in roots: prospects for abiotic stress tolerance

    Peralta Ogorek, Lucas León, Jimenez Serna, Juan de la Cruz, Visser, E. J. W., Takahashi, H., Nakazono, M., Shabala, S. & Pedersen, Ole, 2023, In: Functional Plant Biology. 51, 11 p., FP23133.

    Research output: Contribution to journalJournal articleResearchpeer-review

  64. Published

    Oxygen Depletion in Arctic Lakes: Circumpolar Trends, Biogeochemical Processes, and Implications of Climate Change

    Klanten, Y., Couture, R. M., Christoffersen, Kirsten Seestern, Vincent, W. F. & Antoniades, D., 2023, In: Global Biogeochemical Cycles. 37, 5, 20 p., e2022GB007616.

    Research output: Contribution to journalReviewResearchpeer-review

  65. Published

    Parallel evolution of fish bi-modal breathing and expansion of olfactory receptor (OR) genes: toward a universal ORs nomenclature

    Silva, L., Mendes, T., Ramos, L., KU, thw266 & Antunes, A., 2023, In: Journal of Genetics and Genomics. 50, 8, 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  66. Published

    Parental exposure to heat waves improves offspring reproductive investment in Tetranychus urticae (Acari: Tetranychidae), but not in its predator, Phytoseiulus persimilis (Acari: Phytoseiidae)

    Tscholl, T., Nachman, Gøsta Støger, Spangl, B., Scalmani, I. & Walzer, A., 2023, In: Ecology and Evolution. 13, 11, 20 p., e10748.

    Research output: Contribution to journalJournal articleResearchpeer-review

  67. Published

    Past, Present and Future of the Aral Sea - A Review of its Fauna and Flora before and during the Regression Crisis

    Plotnikov, I. S., Aladin, N. V., Zhakova, L. V., Mossin, J. & Høeg, Jens Thorvald, 2023, In: Zoological Studies. 62, 38 p., 19.

    Research output: Contribution to journalJournal articleResearchpeer-review

  68. Published

    Pelagic Nitrogen Fixation and Diazotrophs in the Eurasian Arctic Ocean: A Missing Piece of the Arctic Nitrogen Puzzle

    Winberg von Friesen, Lisa, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 192 p.

    Research output: Book/ReportPh.D. thesisResearch

  69. Published

    Pervasive incomplete lineage sorting illuminates speciation and selection in primates

    Rivas-González, I., Rousselle, M., Li, F., Zhou, L., Dutheil, J. Y., Munch, K., Shao, Y., Wu, D., Schierup, M. H. & KU, thw266, 2023, In: Science (New York, N.Y.). 380, 6648, 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  70. Published

    Phage-Inducible Chromosomal Islands as a Diagnostic Platform to Capture and Detect Bacterial Pathogens

    Ibarra Chavez, Rodrigo, Reboud, J., Penadés, J. R. & Cooper, J. M., 2023, In: Advanced Science. 10, 24, 11 p., 2301643.

    Research output: Contribution to journalJournal articleResearchpeer-review

  71. Published

    Phagotrophic Protists Modulate Copper Resistance of the Bacterial Community in Soil

    Lv, Z., Xu, M., Liu, Y., Rønn, Regin, Rensing, C., Liu, S., Gao, S., Liao, H., Liu, Y. R., Chen, W., Zhu, Y. G., Huang, Q. & Hao, X., 2023, In: Environmental Science and Technology. 57, 9, p. 3590-3601 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  72. Published

    Pharmacokinetics of Locally Applied Antibiotic Prophylaxis for Implant-Based Breast Reconstruction

    Hemmingsen, Mathilde Nejrup, Bennedsen, A. K., Kullab, R. B., Norlin, C. B., Ørholt, M., Larsen, A., Bue, M., Lichtenberg, Mads, Hertz, Frederik Boëtius, Damsgaard, T. E., Vester-Glowinski, Peter Viktor, Sørensen, Søren Johannes, Bjarnsholt, Thomas & Herly, Mikkel, 2023, In: JAMA network open. 6, 12, 11 p., E2348414.

    Research output: Contribution to journalJournal articleResearchpeer-review

  73. Published

    Pharmacological Nature of the Purinergic P2Y Receptor Subtypes That Participate in the Blood Pressure Changes Produced by ADPβS in Rats

    Silva-Velasco, R. C., Villanueva-Castillo, B., Haanes, Kristian Agmund, MaassenVanDenBrink, A. & Villalón, C. M., 2023, In: Pharmaceuticals. 16, 12, 19 p., 1683.

    Research output: Contribution to journalJournal articleResearchpeer-review

  74. Published

    Phosphorylation of Schizosaccharomyces pombe Dss1 mediates direct binding to the ubiquitin-ligase Dma1 in vitro

    Jacobsen, Nina Louise, Bloch, Magnus Borup, Millard, P. S., Ruidiaz, Sarah Frederiksen, Elsborg, Jonas Damgaard, Boomsma, Wouter, Hendus-Altenburger, R., Hartmann-Petersen, Rasmus & Kragelund, Birthe Brandt, 2023, In: Protein Science. 32, 9, 16 p., e4733.

    Research output: Contribution to journalJournal articleResearchpeer-review

  75. Published

    Photosynthetic capacity in seagrass seeds and early-stage seedlings of Zostera marina

    Brodersen, Kasper Elgetti & Kühl, Michael, 2023, In: New Phytologist. 239, 4, 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  76. Published

    Phylogenomic analyses provide insights into primate evolution

    Shao, Y., Zhou, L., Li, F., Zhao, L., Zhang, B. L., Shao, F., Chen, J. W., Chen, C. Y., Bi, X., Zhuang, X. L., Zhu, H. L., Hu, J., Sun, Z., Li, X., Wang, D., Rivas-González, I., Wang, S., Wang, Y. M., Chen, W., Li, G. & 23 others, Lu, H. M., Liu, Y., Kuderna, L. F. K., Farh, K. K. H., Fan, P. F., Yu, L., Li, M., Liu, Z. J., Tiley, G. P., Yoder, A. D., Roos, C., Hayakawa, T., Marques-Bonet, T., Rogers, J., Stenson, P. D., Cooper, D. N., Schierup, M. H., Yao, Y. G., Zhang, Y. P., Wang, W., Qi, X. G., KU, thw266 & Wu, D. D., 2023, In: Science (New York, N.Y.). 380, 6648, p. 913-924 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  77. Published

    Physiological effects of temperature on Greenland halibut Reinhardtius hippoglossoides shows high vulnerability of Arctic stenotherms to global warming

    Ruth, A., Svendsen, M. B. S., Nygaard, R., Christensen, E. A. F., Bushnell, P. G. & Steffensen, John Fleng, 2023, In: Journal of Fish Biology. 103, 3, p. 675-683 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  78. Published

    Phytoplankton diversity explained by connectivity across a mesoscale frontal system in the open ocean

    Bendtsen, Jørgen, Sørensen, L. L., Daugbjerg, Niels, Lundholm, Nina & Richardson, Katherine, 2023, In: Scientific Reports. 13, 12 p., 12117.

    Research output: Contribution to journalJournal articleResearchpeer-review

  79. Published

    Plant YTHDF proteins are direct effectors of antiviral immunity against an N6-methyladenosine-containing RNA virus

    Martínez-Pérez, M., Aparicio, F., Arribas Hernandez, Laura, Tankmar, Mathias Due, Rennie, Sarah, von Bülow, Sören, Lindorff-Larsen, Kresten, Brodersen, Peter & Pallas, V., 2023, In: EMBO Journal. 42, 18, 17 p., e113378.

    Research output: Contribution to journalJournal articleResearchpeer-review

  80. Published

    Plant traits and associated data from a warming experiment, a seabird colony, and along elevation in Svalbard

    Vandvik, V., Halbritter, A. H., Althuizen, I. H. J., Christiansen, C. T., Henn, J. J., Jónsdóttir, I. S., Klanderud, K., Macias-Fauria, M., Malhi, Y., Maitner, B. S., Michaletz, S., Roos, R. E., Telford, R. J., Bass, P., Björnsdóttir, K., Bustamante, L. L. V., Chmurzynski, A., Chen, S., Haugum, S. V., Kemppinen, J. & 15 others, Lepley, K., Li, Y., Linabury, M., Matos, I. S., Neto-Bradley, B. M., Ng, M., Niittynen, P., Östman, S., Pánková, K., Roth, N., Castorena, M., Spiegel, M., Thomson, E., Vågenes, A. S. & Enquist, B. J., 2023, In: Scientific Data. 10, 1, 21 p., 578.

    Research output: Contribution to journalJournal articleResearchpeer-review

  81. Published

    Plasmid permissiveness of wastewater microbiomes can be predicted from 16S rRNA sequences by machine learning

    Moradigaravand, D., Li, L., Dechesne, A., Nesme, Joseph, de la Cruz, R., Ahmad, H., Banzhaf, M., Sørensen, Søren Johannes, Smets, B. F. & Kreft, J. U., 2023, In: Bioinformatics (Oxford, England). 39, 7, 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  82. Published

    Plasmids metagenomic: insight into their cryptic ecology

    He, Wanli, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 139 p.

    Research output: Book/ReportPh.D. thesisResearch

  83. Published

    Plastic debris in lakes and reservoirs

    Nava, V., Chandra, S., Aherne, J., Alfonso, M. B., Antão-Geraldes, A. M., Attermeyer, K., Bao, R., Bartrons, M., Berger, S. A., Biernaczyk, M., Bissen, R., Brookes, J. D., Brown, D., Cañedo-Argüelles, M., Canle, M., Capelli, C., Carballeira, R., Cereijo, J. L., Chawchai, S., Christensen, S. T. & 59 others, Christoffersen, Kirsten Seestern, de Eyto, E., Delgado, J., Dornan, T. N., Doubek, J. P., Dusaucy, J., Erina, O., Ersoy, Z., Feuchtmayr, H., Frezzotti, M. L., Galafassi, S., Gateuille, D., Gonçalves, V., Grossart, H. P., Hamilton, D. P., Harris, T. D., Kangur, K., Kankılıç, G. B., Kessler, R., Kiel, C., Krynak, E. M., Leiva-Presa, À., Lepori, F., Matias, M. G., Matsuzaki, S. I. S., McElarney, Y., Messyasz, B., Mitchell, M., Mlambo, M. C., Motitsoe, S. N., Nandini, S., Orlandi, V., Owens, C., Özkundakci, D., Pinnow, S., Pociecha, A., Raposeiro, P. M., Rõõm, E. I., Rotta, F., Salmaso, N., Sarma, S. S. S., Sartirana, D., Scordo, F., Sibomana, C., Siewert, D., Stepanowska, K., Tavşanoğlu, Ü. N., Tereshina, M., Thompson, J., Tolotti, M., Valois, A., Verburg, P., Welsh, B., Wesolek, B., Weyhenmeyer, G. A., Wu, N., Zawisza, E., Zink, L. & Leoni, B., 2023, In: Nature. 619, p. 317-322 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  84. Published

    Pooled analysis of frontal lobe transcriptomic data identifies key mitophagy gene changes in Alzheimer's disease brain

    Mei, T., Li, Yuan, Orduña Dolado, A., Li, Zhiquan, Andersson, Robin, Berliocchi, Laura & Rasmussen, Lene Juel, 2023, In: Frontiers in Aging Neuroscience. 15, 14 p., 1101216.

    Research output: Contribution to journalJournal articleResearchpeer-review

  85. Published

    Possible signs of recovery of the nearly extirpated Spitsbergen bowhead whales: calves observed in east Greenland

    Tervo, O. M., Louis, Marie Georgette Yolande J, Sinding, Mikkel Holger Strander, Heide-Jørgensen, M. P. & Hansen, R. G., 2023, In: Polar Research. 42, 4 p., 8809.

    Research output: Contribution to journalJournal articleResearchpeer-review

  86. Published

    Potential usages of A-to-I RNA editing patterns as diagnostic biomarkers

    Rodriguez Morales, D., Ilieva, M., Rennie, Sarah & Uchida, S., 2023, In: American journal of physiology. Cell physiology. 324, 4, p. C837-C842 6 p.

    Research output: Contribution to journalReviewResearchpeer-review

  87. Published

    Predicting lake bathymetry from the topography of the surrounding terrain using deep learning

    Martinsen, K. T., Sand-Jensen, Kaj & Selvan, Raghav, 2023, In: Limnology and Oceanography: Methods. 21, 10, p. 625-636

    Research output: Contribution to journalJournal articleResearchpeer-review

  88. Published

    Prediction of Quality-control Degradation Signals in Yeast Proteins

    Johansson, Kristoffer Enøe, Mashahreh, B., Hartmann-Petersen, Rasmus, Ravid, T. & Lindorff-Larsen, Kresten, 2023, In: Journal of Molecular Biology. 435, 2, 9 p., 167915.

    Research output: Contribution to journalJournal articleResearchpeer-review

  89. Published

    Primary cilia as dynamic and diverse signalling hubs in development and disease

    Mill, P., Christensen, Søren Tvorup & Pedersen, Lotte Bang, 2023, In: Nature Reviews. Genetics. 24, 21 p.

    Research output: Contribution to journalReviewResearchpeer-review

  90. Published

    Probabilistic modelling in genomics

    Rasmussen, Malthe Sebro, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 158 p.

    Research output: Book/ReportPh.D. thesisResearch

  91. Published

    Progesterone distribution in the trigeminal system and its role to modulate sensory neurotransmission: influence of sex

    Maddahi, A., Warfvinge, K., Holm, A., Edvinsson, J. C. A., Reducha, Philip Victor, Kazantzi, Spyridoula, Haanes, Kristian Agmund & Edvinsson, L., 2023, In: Journal of Headache and Pain. 24, 1, 16 p., 154.

    Research output: Contribution to journalJournal articleResearchpeer-review

  92. Published

    Proteomic Profiling of Colorectal Adenomas Identifies a Predictive Risk Signature for Development of Metachronous Advanced Colorectal Neoplasia

    Bech, J. M., Terkelsen, Thilde Bagger, Bartels, Annette Snejbjerg, Coscia, F., Doll, S., Zhao, S., Zhang, Z., Brünner, N., Lindebjerg, J., Madsen, G. I., Fang, X., Mann, Matthias & Moreira, José, 2023, In: Gastroenterology. 165, 1, p. 121-132.e5

    Research output: Contribution to journalJournal articleResearchpeer-review

  93. Published

    Quantification of gene copy numbers is valuable in marine microbial ecology: a comment to Meiler et al. (2022).

    Zehr, J. P. & Riemann, Lasse, 2023, In: Limnology and Oceanography. 68, 6, 7 p.

    Research output: Contribution to journalComment/debateResearchpeer-review

  94. Published

    Quantitative Evaluation of Stem-like Markers of Human Glioblastoma Using Single-Cell RNA Sequencing Datasets

    He, Yue, Døssing, Kristina Benedikte V, Sloth, Ane Beth, He, Xuening, Rossing, M. & Kjær, Andreas, 2023, In: Cancers. 15, 5, 16 p., 1557.

    Research output: Contribution to journalJournal articleResearchpeer-review

  95. Published

    RNA trafficking and subcellular localization—a review of mechanisms, experimental and predictive methodologies

    Wang, Jun, Horlacher, M., Cheng, L. & Winther, Ole, 2023, In: Briefings in Bioinformatics. 24, 5, 14 p., bbad249.

    Research output: Contribution to journalJournal articleResearchpeer-review

  96. Published

    Range-wide population genomics of common seadragons shows secondary contact over a former barrier and insights on illegal capture

    Stiller, Josefin, Wilson, N. G. & Rouse, G., 2023, In: BMC Biology. 21, 17 p., 129.

    Research output: Contribution to journalJournal articleResearchpeer-review

  97. Published

    Rapid and continuing regional decline of butterflies in eastern Denmark 1993-2019

    Bjerregård, E. B., Båstrup-Spohr, Lars, Markussen, Bo & Bruun, Hans Henrik, 2023, In: Biological Conservation. 284, 8 p., 110208.

    Research output: Contribution to journalJournal articleResearchpeer-review

  98. Published

    Rapid protein stability prediction using deep learning representations

    Blaabjerg, Lasse Møller, Kassem, M. M., Good, L. L., Jonsson, Nicolas, Cagiada, Matteo, Johansson, Kristoffer Enøe, Boomsma, Wouter, Stein, Amelie & Lindorff-Larsen, Kresten, 2023, In: eLife. 12, 19 p., e82593.

    Research output: Contribution to journalJournal articleResearchpeer-review

  99. Published

    Rare Catechol-O-methyltransferase Missense Variants Are Structurally Unstable Proteasome Targets

    Larsen, Fia Brunsgaard Valsted, Cagiada, Matteo, Dideriksen, J., Stein, Amelie, Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2023, In: Biochemistry. 62, 8, 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  100. Published
  101. Published

    Reasons for the dramatic loss of Lobelia dortmanna, a keystone plant species of softwater lakes in the Northern Hemisphere

    Nielsen, S. R., Martinsen, K. T., Pedersen, Ole & Båstrup-Spohr, Lars, 2023, In: Freshwater Biology. 68, 10, p. 1673-1684 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review